species:   Rhsol
pid:       PID0570
parent:    Rhi-milR-142
paralog:   
locus:     KB317737.1:58489-58563
matures:   ['UGGCUGUGAGUAUUCCUUUUGU', 'CAGAGGAAUCUGACGGCGCAACA']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317737.1:58489-58563

0 out of bounds
21 alignments
18 proper strand
12 stranded perfect matches

         *************************        ************************         
GCCAAAAACGACCAGAGGAAUCUGACGGCGCAACAAUUGUCCGUGGCUGUGAGUAUUCCUUUUGUACCAUAACUA
..........((.((((((((((.(((((.((.(........)))))))).)).)))))))).))..........
-------------------------------------------UGGCUGUGAGUAUUCCUUUUGU---------- l=22 a=2 c
------------CAGAGGAAUCUGACGGCGCAACA---------------------------------------- l=23 a=0 c*
--------------------------------------------GGCUGUGAGUAUUCCUUUUGUA--------- l=22 a=4 ma
-----------CCAGAGGAAUCUGACGGCGCAAC----------------------------------------- l=23 a=0 ma*

------------------AAUCUGACGGuGCAACAAUUGU----------------------------------- l=22 a=1 
------------------------------CAACAAUUGUCCGUGGCUGUGAG---------------------- l=23 a=1 
-------------------------------------------UGGCUGUGAGUAUUCCUUUUGU---------- l=22 a=2 (c)
-------------------------------------------UGGCUGUGAGUAUUuCUUUUGU---------- l=22 a=1 
-------------------------------------------UGGCUGUGAGUAUUCuUUUUGU---------- l=22 a=1 
-------------------------------------------UGGCUGUGAGUAUUCCUUUUGUu--------- l=23 a=2 
-------------------------------------------UGGCUGUGAGUAUUCCUUUUGUA--------- l=23 a=3 
-------------------------------------------UGGCUGUGAGUAUUCCUUUUGUAC-------- l=24 a=2 
-------------------------------------------UGGCUGUGAGUAUUCCUUUUGUAu-------- l=24 a=1 
--------------------------------------------GGCUGUGAGUAUUCCUUUUGUA--------- l=22 a=4 (ma)

mb-01011
ax-1011011
ku-01
ss-111111111110
fn-111
